Prediction of functional profiles from metagenomic 16S rRNA data

Documentation for package ‘Tax4Fun’ version 0.3.1

Tax4Fun-package	Prediction of functional profiles from amplicon-data
GN16SData	QIIME-based OTU annotation of the Guerrero Negro hypersaline microbial mat data set.
GNMetagenomeData	Taxonomic abundances for the Guerrero Negro hypersaline microbial mat data set.
importMoPProReferenceData	Import of Tax4Fun and MoP-Pro reference data
importQIIMEBiomData	Import of QIIME 16S OTU table(s) in BIOM format
importQIIMEBiomDataFile	Import of single QIIME 16S OTU table in BIOM format
importQIIMEData	Import of QIIME 16S OTU table(s) in txt format
importQIIMEDataFile	Import of single QIIME 16S OTU table in txt format
importSilvaNgsData	Import of SILVAngs OTU table(s) in csv format
importSilvaNgsDataFile	Import of single SILVAngs file in csv format
importTax4FunReferenceData	Import of Tax4Fun and MoP-Pro reference data
importTaxyProData	Import of Taxy-Pro profile(s)
importTaxyProDataFile	Import of single Taxy-Pro profile
MoPPro	Estimation of metabolic profile(s) based on Taxy-Pro predictions from whole metagenome shotgun data
Tax4Fun	Prediction of functional profiles from amplicon-data